Dr V Anne Smith

Senior Lecturer

Dyers Brae 12
tel. 01334 463368
fax. 01334 463366
vas1@st-andrews.ac.uk

My research is in computational biology, specifically, in the analysis of complex biological networks. I develop and use functional network inference algorithms to reveal the functional interactions among elements of a network. I study gene regulatory, neural information flow, and ecological networks.

For more information, please visit my research pages: Complex Biological Neworks.

Positions

2005-present: Academic Fellow, School of Biology, University of St Andrews
2001-2005: Postdoctoral Researcher, Department of Neurobiology, Duke University Medical Center

Education

2001 PhD, Biology, Indiana University
1995 BS, Biology, College of William and Mary

 

Publications

Vogogias, A, Kennedy, J, Archaumbault, D, Smith, VA & Currant, H 2016, MLCut: exploring Multi-Level Cuts in dendrograms for biological data. in C Turkay & TR Wan (eds), Computer Graphics and Visual Computing Conference (CGVC) 2016. Eurographics Association, Computer Graphics & Visual Computing (CGVC) 2016, Bournemouth, United Kingdom, 15-16 September. DOI: 10.2312/cgvc.20161288
Koussounadis, A, Langdon, S, Um, IH, Kay, C, Francis, K, Harrison, DJ & Smith, VA 2016, 'Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models' BMC Cancer, vol 16, 205. DOI: 10.1186/s12885-016-2212-6
Aderhold, A, Smith, VA & Husmeier, D 2016, Biological network inference at multiple scales: from gene regulation to species interactions. in M Elloumi, CS Iliopoulos, JTL Wang & AY Zomaya (eds), Pattern Recognition in Computational Molecular Biology: Techniques and Approaches. Wiley Book Series on Bioinformatics: Computational Techniques and Engineering, Wiley-Blackwell, pp. 525-554.
Verleyen, W, Langdon, SP, Faratian, D, Harrison, DJ & Smith, VA 2015, 'Novel Monte Carlo approach quantifies data assemblage utility and reveals power of integrating molecular and clinical information for cancer prognosis' Scientific Reports, vol 5, 15563. DOI: 10.1038/srep15563
Koussounadis, A, Langdon, S, Um, IH, Harrison, DJ & Smith, VA 2015, 'Relationship between differentially expressed mRNA and mRNA-protein correlations in a xenograft model system' Scientific Reports, vol 5, 10775. DOI: 10.1038/srep10775
found:31
1  2  3  4  5  6  7 
show: